“…This book contains information on GenBank, the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences…”

“…Links to the NCBI home page and the GenBank Sequence Database home page. Accesses the Medline database…”

Tabla de Contenidos: “…The EMBL nucleotide sequence and genome reviews databases / Peter Sterk ... [et al.] -- Using GenBank / David Wheeler -- A collection of plant-specific genomic data and resources at NCBI / Tatiana Tatusova, Brian Smith-White, and James Ostell -- UniProtKB/Swiss-Prot / Emmanuel Boutet ... …”

Tabla de Contenidos: “…A brief history of NCBI's formation and growth / Literature -- NCBI literature resources / Ed Sequeira -- NLM Catalog / Sarah Weis -- PubMed: the bibliographic database / Kathi Canese and Sarah Weis -- PubMed Central / Chris Maloney, Ed Sequeira, Christopher Kelly, Rebecca Orris, and Jeffrey Beck -- Bookshelf / Marilu Hoeppner, Martin Latterner, and Karanjit Siyan -- NLM DTD to NISO JATS Z39.96-2012 / Jeffrey Beck and Laura Randall -- The NIH Manuscript Submission system / Abigail Acland -- Genomes -- What's in a genome at NCBI? / James Ostell -- GenBank / Ilene Mizrachi -- Eukaryotes -- Clone / Valerie Schneider -- Genome Reference Consortium / Valerie Schneider, PhD and Deanna Church -- Eukaryotic Genome Annotation Pipeline / Franc ̧oise Thibaud-Nissen, Alexander Souvorov, Terence Murphy, Michael DiCuccio, and Paul Kitts -- Prokaryotes -- About prokaryotic genome processing and tools / Tatiana Tatusova, Stacy Ciufo, Boris Fedorov, Kathleen O'Neill, Igor Tolstoy, and Leonid Zaslavsky -- Prokaryotic Genome Annotation Pipeline / Tatiana Tatusova, Mike DiCuccio, Azat Badretdin, Vyacheslav Chetvernin, Stacy Ciufo, and Wenjun Li -- Viruses -- About viral and phage genome processing and tools / Yiming Bao, J. …”

Tabla de Contenidos: “…Cover; Copyright; Credits; About the Author; About the Reviewers; www.PacktPub.com; Table of Contents; Preface; Chapter 1: Python and the Surrounding Software Ecology; Introduction; Installing the required software with Anaconda; Installing the required software with Docker; Interfacing with R via rpy2; Performing R magic with IPython; Chapter 2: Next-generation Sequencing; Introduction; Accessing GenBank and moving around NCBI databases; Performing basic sequence analysis; Working with modern sequence formats; Working with alignment data; Analyzing data in variant call format…”

Tabla de Contenidos: “…Runtime errorsException Handling Statements; Optional features of exception handling statements; Exception handling and generator objects; Raising Exceptions; The raise statement; Raising an exception to end a loop; Extended Examples; Extracting Information from an HTML File; The Grand Unified Bioinformatics File Parser; Reading the sequences in a FASTA file; Generalized parsing; Parsing GenBank Files; Translating RNA Sequences; Step 1; Step 2; Step 3; Step 4; Step 5; Constructing a Table from a Text File; Step 1; Step 2; Step 3; Step 4; Step 5; Tips, Traps, and Tracebacks; Tips; Traps…”

Tabla de Contenidos: “…5.9 In-depth case study: the balanced business scorecard at GenBank5.10 Key learning points; 5.11 Practical action guidelines; 6 Sink or swim: evaluation as the key to IT outsourcing; 6.1 Introduction; 6.2 Outsourcing: patterns of assessment; 6.3 The centrality of the contract; 6.4 Setting up a measurement system; 6.5 Outsourced: anticipating evaluation issues; 6.6 Staffing: a vital resource; 6.7 Summary; 6.8 Key learning points; 6.9 Practical action guidelines; 7 E-valuation (1): not business as usual?…”

Tabla de Contenidos: “…. -- DNA Sequence Determinations Require Quality Control -- REFERENCES -- 6 The Collection, Analysis, and Distribution of Information and Materials -- PRESENT INFORMATION-HANDLING ORGANIZATIONS -- GenBank/EMBL…”

Tabla de Contenidos: “…. -- See also -- Chapter 3: Next-Generation Sequencing -- Accessing GenBank and moving around NCBI databases -- Getting ready -- How to do it... -- There's more... -- See also -- Performing basic sequence analysis -- Getting ready -- How to do it... -- There's more... -- See also -- Working with modern sequence formats -- Getting ready -- How to do it... -- There's more... -- See also -- Working with alignment data -- Getting ready -- How to do it... -- There's more... -- See also -- Extracting data from VCF files -- Getting ready -- How to do it... -- There's more... -- See also…”

“…On a related topic, the genome sequence of thousands of E. coli strains have been deposited in GenBank, and this information is revealing unique markers such as CRISPR (clustered regularly interspaced short palindromic repeats) and virulence gene markers that could be used to identify E. coli pathotypes. …”

“…On a related topic, the genome sequence of thousands of E. coli strains have been deposited in GenBank, and this information is revealing unique markers such as CRISPR (clustered regularly interspaced short palindromic repeats) and virulence gene markers that could be used to identify E. coli pathotypes. …”