The NCBI handbook
"The NCBI Handbook 2nd Edition is geared towards advanced users of NCBI resources to provide an understanding of how bioinformatics resources at NCBI work. It is not a step-by-step user manual but complements NCBI user guides, tutorials, help information, and other existing documentation. It is...
| Otros Autores: | |
|---|---|
| Formato: | Revista digital |
| Idioma: | Inglés |
| Publicado: |
Bethesda, MD :
National Center for Biotechnology Information (US)
2013.
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| Materias: | |
| Ver en Biblioteca Universitat Ramon Llull: | https://discovery.url.edu/permalink/34CSUC_URL/1im36ta/alma991009820436706719 |
Tabla de Contenidos:
- A brief history of NCBI's formation and growth / Literature
- NCBI literature resources / Ed Sequeira
- NLM Catalog / Sarah Weis
- PubMed: the bibliographic database / Kathi Canese and Sarah Weis
- PubMed Central / Chris Maloney, Ed Sequeira, Christopher Kelly, Rebecca Orris, and Jeffrey Beck
- Bookshelf / Marilu Hoeppner, Martin Latterner, and Karanjit Siyan
- NLM DTD to NISO JATS Z39.96-2012 / Jeffrey Beck and Laura Randall
- The NIH Manuscript Submission system / Abigail Acland
- Genomes
- What's in a genome at NCBI? / James Ostell
- GenBank / Ilene Mizrachi
- Eukaryotes
- Clone / Valerie Schneider
- Genome Reference Consortium / Valerie Schneider, PhD and Deanna Church
- Eukaryotic Genome Annotation Pipeline / Franc¸oise Thibaud-Nissen, Alexander Souvorov, Terence Murphy, Michael DiCuccio, and Paul Kitts
- Prokaryotes
- About prokaryotic genome processing and tools / Tatiana Tatusova, Stacy Ciufo, Boris Fedorov, Kathleen O'Neill, Igor Tolstoy, and Leonid Zaslavsky
- Prokaryotic Genome Annotation Pipeline / Tatiana Tatusova, Mike DiCuccio, Azat Badretdin, Vyacheslav Chetvernin, Stacy Ciufo, and Wenjun Li
- Viruses
- About viral and phage genome processing and tools / Yiming Bao, J. Rodney Brister, Olga Blinkova, Danso Ako-adjei, and Chetvernin Vyacheslav
- Virus variation / J. Rodney Brister, and Yiming Bao
- Variation
- Variation overview / Deanna Church, Stephen Sherry, Lon Phan, Minghong Ward, Melissa Landrum, and Donna Maglott
- The Database of Genotypes and Phenotypes (dbGaP) and PheGenI / Kimberly A Tryka, Luning Hao, Anne Sturcke, Yumi Jin, Masato Kimura, Zhen Y Wang, Lora Ziyabari, Moira Lee, and Michael Feolo
- The Database of Short Genetic Variation (dbSNP) / Adrienne Kitts, Lon Phan, Minghong Ward, and Deanna Church
- ClinVar / Melissa Landrum, Jennifer Lee, George Riley, Wonhee Jang, Wendy Rubinstein, Deanna Church, and Donna Maglott
- Health
- MedGen / Maryam Halavi, Donna Maglott, Viatcheslav Gorelenkov, and Wendy Rubinstein
- ClinVar / Melissa Landrum, Jennifer Lee, George Riley, Wonhee Jang, Wendy Rubinstein, Deanna Church, and Donna Maglott
- Genes and gene expression
- Genes and gene expression / Donna Maglott, Tanya Barrett, Terence Murphy, Michael Feolo, Lukas Wagner, and Richa Agarwala
- Gene Expression Omnibus (GEO) / Tanya Barrett
- Gene / Donna Maglott Kim Pruitt Tatiana Tatusova and Terence Murphy PhD
- UniGene / Lukas Wagner and Richa Agarwala
- Nucleotide
- GenBank / Ilene Mizrachi
- Protein
- NCBI protein resources / Eric Sayers
- Small molecules and biological assays
- Small molecules and biological activities / Rana Morris
- Tools
- The BLAST sequence analysis tool / Thomas Madden
- The Entrez Search and Retrieval System / Jim Ostell
- C++ Toolkit / Denis Vakatov
- LinkOut: linking to external resources from NCBI databases / Y. Kathy Kwan
- Metadata
- BioSample / Tanya Barrett
- BioProject / Karen Clark, Kim Pruitt, Tatiana Tatusova, and Ilene Mizrachi.
