Algorithmic and artificial intelligence methods for protein bioinformatics
An in-depth look at the latest research, methods, and applications in the field of protein bioinformaticsThis book presents the latest developments in protein bioinformatics, introducing for the first time cutting-edge research results alongside novel algorithmic and AI methods for the analysis of p...
| Otros Autores: | , , |
|---|---|
| Formato: | Libro electrónico |
| Idioma: | Inglés |
| Publicado: |
Hoboken, New Jersey :
Wiley
[2014]
|
| Edición: | First edition |
| Colección: | Wiley series on bioinformatics: Computational techniques and engineering ;
22 |
| Materias: | |
| Ver en Biblioteca Universitat Ramon Llull: | https://discovery.url.edu/permalink/34CSUC_URL/1im36ta/alma991009628138506719 |
Tabla de Contenidos:
- PREFACE ix
- CONTRIBUTORS xv
- I FROM PROTEIN SEQUENCE TO STRUCTURE
- 1 EMPHASIZING THE ROLE OF PROTEINS IN CONSTRUCTION OF THE DEVELOPMENTAL GENETIC TOOLKIT IN PLANTS 3
- Anamika Basu and Anasua Sarkar
- 2 PROTEIN SEQUENCE MOTIF INFORMATION DISCOVERY 41
- Bernard Chen
- 3 IDENTIFYING CALCIUM BINDING SITES IN PROTEINS 57
- Hui Liu and Hai Deng
- 4 REVIEW OF IMBALANCED DATA LEARNING FOR PROTEIN METHYLATION PREDICTION 71
- Zejin Ding and Yan-Qing Zhang
- 5 ANALYSIS AND PREDICTION OF PROTEIN POSTTRANSLATIONAL MODIFICATION SITES 91
- Jianjiong Gao, Qiuming Yao, Curtis Harrison Bollinger, and Dong Xu
- II PROTEIN ANALYSIS AND PREDICTION
- 6 PROTEIN LOCAL STRUCTURE PREDICTION 109
- Wei Zhong, Jieyue He, Robert W. Harrison, Phang C. Tai, and Yi Pan
- 7 PROTEIN STRUCTURAL BOUNDARY PREDICTION 125
- Gulsah Altun
- 8 PREDICTION OF RNA BINDING SITES IN PROTEINS 153
- Zhi-Ping Liu and Luonan Chen
- 9 ALGORITHMIC FRAMEWORKS FOR PROTEIN DISULFIDE CONNECTIVITY DETERMINATION 171
- Rahul Singh, William Murad, and Timothy Lee
- 10 PROTEIN CONTACT ORDER PREDICTION: UPDATE 205
- Yi Shi, Jianjun Zhou, David S. Wishart, and Guohui Lin
- 11 PROGRESS IN PREDICTION OF OXIDATION STATES OF CYSTEINES VIA COMPUTATIONAL APPROACHES 217
- Aiguo Du, Hui Liu, Hai Deng, and Yi Pan
- 12 COMPUTATIONAL METHODS IN CRYOELECTRON MICROSCOPY 3D STRUCTURE RECONSTRUCTION 231
- Fa Zhang, Xiaohua Wan, and Zhiyong Liu
- III PROTEIN STRUCTURE ALIGNMENT AND ASSESSMENT
- 13 FUNDAMENTALS OF PROTEIN STRUCTURE ALIGNMENT 255
- Mark Brandt, Allen Holder, and Yosi Shibberu
- 14 DISCOVERING 3D PROTEIN STRUCTURES FOR OPTIMAL STRUCTURE ALIGNMENT 281
- TomáS Novosád, Václav Sna-Sel, Ajith Abraham, and Jack Y. Yang
- 15 ALGORITHMIC METHODOLOGIES FOR DISCOVERY OF NONSEQUENTIAL PROTEIN STRUCTURE SIMILARITIES 299
- Bhaskar DasGupta, Joseph Dundas, and Jie Liang
- 16 FRACTAL RELATED METHODS FOR PREDICTING PROTEIN STRUCTURE CLASSES AND FUNCTIONS 317
- Zu-Guo Yu, Vo Anh, Jian-Yi Yang, and Shao-Ming Zhu.
- 17 PROTEIN TERTIARY MODEL ASSESSMENT 339
- Anjum Chida, Robert W. Harrison, and Yan-Qing Zhang
- IV PROTEIN-PROTEIN ANALYSIS OF BIOLOGICAL NETWORKS
- 18 NETWORK ALGORITHMS FOR PROTEIN INTERACTIONS 357
- Suely Oliveira
- 19 IDENTIFYING PROTEIN COMPLEXES FROM PROTEIN-PROTEIN INTERACTION NETWORKS 377
- Jianxin Wang, Min Li, and Xiaoqing Peng
- 20 PROTEIN FUNCTIONAL MODULE ANALYSIS WITH PROTEIN-PROTEIN INTERACTION (PPI) NETWORKS 393
- Lei Shi, Xiujuan Lei, and Aidong Zhang
- 21 EFFICIENT ALIGNMENTS OF METABOLIC NETWORKS WITH BOUNDED TREEWIDTH 413
- Qiong Cheng, Piotr Berman, Robert W. Harrison, and Alexander Zelikovsky
- 22 PROTEIN-PROTEIN INTERACTION NETWORK ALIGNMENT: ALGORITHMS AND TOOLS 431
- Valeria Fionda
- V APPLICATION OF PROTEIN BIOINFORMATICS
- 23 PROTEIN-RELATED DRUG ACTIVITY COMPARISON USING SUPPORT VECTOR MACHINES 451
- Wei Zhong and Jieyue He
- 24 FINDING REPETITIONS IN BIOLOGICAL NETWORKS: CHALLENGES, TRENDS, AND APPLICATIONS 461
- Simona E. Rombo
- 25 MeTaDoR: ONLINE RESOURCE AND PREDICTION SERVER FOR MEMBRANE TARGETING PERIPHERAL PROTEINS 481
- Nitin Bhardwaj, Morten Källberg, Wonhwa Cho, and Hui Lu
- 26 BIOLOGICAL NETWORKS-BASED ANALYSIS OF GENE EXPRESSION SIGNATURES 495
- Gang Chen and Jianxin Wang
- INDEX 507.
